RNAcentral/genes-from-transcripts
By RNAcentral · ↓ 0 · ♥ 0 · Updated 2025-06-13
What's in this repo
This page lists the files in RNAcentral/genes-from-transcripts, including model_fold_0.onnx, model_fold_1.onnx, model_fold_2.onnx and more.
- 5 ONNX models (.onnx files)
- 8 files, including 5 .onnx, 1 .md, 1 .json
- Last updated 2025-06-13
ONNX files
| File | Size | Download |
|---|---|---|
| model_fold_0.onnx | — | Download |
| model_fold_1.onnx | — | Download |
| model_fold_2.onnx | — | Download |
| model_fold_3.onnx | — | Download |
| model_fold_4.onnx | — | Download |
How to use
These ONNX files can be loaded with ONNX Runtime. To inspect a model graph, upload the file to the Netron viewer. Download links point to the original files on Hugging Face.
README
Model description
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This is a random forest classifier capable of predicting whether a given pair of transcriptscome from the same gene or not. It is trained on a dataset derived from ensembl transcripts, and is being evaluated on transcripts from the same sources, and others such as FlyBase
How to Get Started with the Model
[More Information Needed]
Model Card Authors
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Andrew Green (afg1)
Model Card Contact
You can contact the model card authors through following channels: [More Information Needed]
Citation
Below you can find information related to citation.
BibTeX:
[More Information Needed]
Intended uses & limitations
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This model is experimental, and is undergoing further testing.
Five-fold cross validation
We test the model on a random subset of the transcript pairs processed from all our coordinate data. These metrics represent the performance on the binary classification task of 'do these two transcripts come from the same gene'
| fold | balanced_acc | F1 | auc | ap |
|---|---|---|---|---|
| 0 | 0.970089 | 0.989711 | 0.995063 | 0.998216 |
| 1 | 0.968053 | 0.98935 | 0.994941 | 0.998181 |
| 2 | 0.970278 | 0.989625 | 0.995177 | 0.998239 |
| 3 | 0.968382 | 0.989364 | 0.994861 | 0.998184 |
| 4 | 0.968858 | 0.989405 | 0.994907 | 0.997969 |
Model info
Created: 2025-04-07
Updated: 2025-06-13
View on Hugging FaceFiles (8)
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